Rapid progress in comparative genomics among the grasses has revealed similar gene content and order despite exceptional differences in chromosome size and number. Large- and small-scale genomic variations are of particular interest, especially among cultivated and wild species, as they encode rapidly evolving features that may be important in adaptation to particular environments. We present a...

During evolution, various processes such as duplication, divergence, recombination, and many other events leads to the evolution of new genes with novel functions. These evolutionary events, thus significantly impact the evolution of cellular, physiological, morphological, and other phenotypic trait of organisms. While evolving, eukaryotes have acquired large number of genes from the earlier pr...

Crop tolerance to flooding is an important agronomic trait. Although rice (Oryza sativa) is considered a flood-tolerant crop, only limited cultivars display tolerance to prolonged submergence, which is largely attributed to the presence of the SUB1A gene. Wild Oryza species have the potential to unveil adaptive mechanisms and shed light on the basis of submergence tolerance traits. In this stud...

For 24 rice (Oryza sativa L.) varieties, genetic variation was studied of the Lox3 gene in samples of the two subspecies, japonica and indica. The genomic DNA was amplified, followed by DNA sequencing to detect sequence variation. A total of 13 single nucleotide polymorphisms (SNPs) was detected in the exon 4 containing lipoxygenase domain. The nucleotide diversity in the Lox3 region of O. sati...

background: physical characteristics of crops play an important role in designing the required machinery and apparatus for planting, harvesting, transport, processing and also storing. the aim of this study was to determine physical characteristics of some native rice varieties cultivated in northern iran, namely gerde, shafagh, tarom-e-hashemi, shiroodi and keshvari. methods: some geometrical,...

Salt tolerance is an important agriculture character in Oryza sativa (rice). This paper proposed a framework of Support Vector Machine Recursive Feature Elimination (SVM-RFE) for analysing Oryza sativa microarray data from GEO. Through preliminary selection using t-test and iterative feature selection by SVM-RFE, we obtained 541 candidate genes. We analysed top 10 genes, which may play highly i...

A long awn is one of the distinct morphological features of wild rice species. This organ is thought to aid in seed dispersal and prevent predation by animals. Most cultivated varieties of Oryza sativa and Oryza glaberrima, however, have lost the ability to form long awns. The causal genetic factors responsible for the loss of awn in these two rice species remain largely unknown. Here, we evalu...

Global production of rice (Oryza sativa) grain is limited by water availability and the low 'leaf-level' photosynthetic capacity of many cultivars. Oryza sativa is extremely susceptible to water-deficits; therefore, predicted increases in the frequency and duration of drought events, combined with future rises in global temperatures and food demand, necessitate the development of more productiv...